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SF3B1

This gene encodes subunit 1 of the splicing factor 3b protein complex. Splicing factor 3b, together with splicing factor 3a and a 12S RNA unit, forms the U2 small nuclear ribonucleoproteins complex (U2 snRNP). The splicing factor 3b/3a complex binds pre-mRNA upstream of the intron's branch site in a sequence independent manner and may anchor the U2 snRNP to the pre-mRNA. Splicing factor 3b is also a component of the minor U12-type spliceosome. The carboxy-terminal two-thirds of subunit 1 have 22 non-identical, tandem HEAT repeats that form rod-like, helical structures. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]
Full Name
Splicing Factor 3b Subunit 1
Function
Involved in pre-mRNA splicing as a component of the splicing factor SF3B complex (PubMed:27720643).
SF3B complex is required for 'A' complex assembly formed by the stable binding of U2 snRNP to the branchpoint sequence (BPS) in pre-mRNA. Sequence independent binding of SF3A/SF3B complex upstream of the branch site is essential, it may anchor U2 snRNP to the pre-mRNA (PubMed:12234937).
Together with other U2 snRNP complex components may also play a role in the selective processing of microRNAs (miRNAs) from the long primary miRNA transcript, pri-miR-17-92 (By similarity).
May also be involved in the assembly of the 'E' complex (PubMed:10882114).
Belongs also to the minor U12-dependent spliceosome, which is involved in the splicing of rare class of nuclear pre-mRNA intron (PubMed:15146077).
Biological Process
Chromatin remodeling1 PublicationIC:ComplexPortal
mRNA splicing, via spliceosomeManual Assertion Based On ExperimentIDA:UniProtKB
Positive regulation of histone acetylation1 PublicationIC:ComplexPortal
Positive regulation of transcription by RNA polymerase I1 PublicationIC:ComplexPortal
Positive regulation of transcription by RNA polymerase II1 PublicationIC:ComplexPortal
Positive regulation of transcription by RNA polymerase IIIManual Assertion Based On ExperimentIDA:ComplexPortal
RNA splicing1 PublicationIC:UniProtKB
RNA splicing, via transesterification reactions1 PublicationNAS:UniProtKB
Spliceosomal complex assemblyManual Assertion Based On ExperimentIBA:GO_Central
Cellular Location
Nucleus
Nucleus speckle
During mitosis, transiently dispersed from the nuclear speckles to the cytoplasm.
PTM
Phosphorylated. Phosphorylation occurs concomitantly with the splicing catalytic steps. Phosphorylation on Thr-244, Thr-248 and Thr-313 by cyclin-dependent kinases promotes interaction with PPP1R8 during mitosis.
Citrullinated by PADI4.

Anti-SF3B1 antibodies

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Target: SF3B1
Host: Rabbit
Antibody Isotype: IgG
Specificity: Human, Mouse, Hamster, Frog, Zebrafish
Clone: D8D8V
Application*: WB
Target: SF3B1
Host: Mouse
Specificity: Mouse, Rat, Human
Clone: CBXS-2057
Application*: WB, IP, IF, E
Target: SF3B1
Host: Rabbit
Antibody Isotype: IgG
Specificity: Human
Clone: CBXS-1300
Application*: WB, P, IF
Target: SF3B1
Host: Rabbit
Antibody Isotype: IgG
Specificity: Mouse, Rat, Human
Clone: CBXS-1299
Application*: WB, P, IF
Target: SF3B1
Host: Rabbit
Antibody Isotype: IgG
Specificity: Human
Clone: CBXS-1243
Application*: WB, IF
Target: SF3B1
Host: Mouse
Antibody Isotype: IgG2b
Specificity: Mouse, Human
Clone: 16
Application*: IC, IP, WB
Target: SF3B1
Host: Rabbit
Antibody Isotype: IgG
Specificity: Human, Mouse, Rat, Monkey, Hamster, Cattle
Clone: CBXS-5436
Application*: WB
Target: SF3B1
Host: Mouse
Antibody Isotype: IgG2b
Specificity: Mouse
Clone: CBXS-3815
Application*: WB
Target: SF3B1
Host: Rabbit
Antibody Isotype: IgG
Specificity: Human, Mouse, Rat, Monkey, Hamster, Cattle
Clone: D7L5T
Application*: WB
For Research Use Only. Not For Clinical Use.
(P): Predicted
* Abbreviations
IFImmunofluorescence
IHImmunohistochemistry
IPImmunoprecipitation
WBWestern Blot
EELISA
MMicroarray
CIChromatin Immunoprecipitation
FFlow Cytometry
FNFunction Assay
IDImmunodiffusion
RRadioimmunoassay
TCTissue Culture
GSGel Supershift
NNeutralization
BBlocking
AActivation
IInhibition
DDepletion
ESELISpot
DBDot Blot
MCMass Cytometry/CyTOF
CTCytotoxicity
SStimulation
AGAgonist
APApoptosis
IMImmunomicroscopy
BABioassay
CSCostimulation
EMElectron Microscopy
IEImmunoelectrophoresis
PAPeptide Array
ICImmunocytochemistry
PEPeptide ELISA
MDMeDIP
SHIn situ hybridization
IAEnzyme Immunoassay
SEsandwich ELISA
PLProximity Ligation Assay
ECELISA(Cap)
EDELISA(Det)
BIBioimaging
IOImmunoassay
LFLateral Flow Immunoassay
LALuminex Assay
CImmunohistochemistry-Frozen Sections
PImmunohistologyp-Paraffin Sections
ISIntracellular Staining for Flow Cytometry
MSElectrophoretic Mobility Shift Assay
RIRNA Binding Protein Immunoprecipitation (RIP)
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